smFISH validation of astrocytes in the mouse brain

!pip install opencv-python !pip install dask_image --upgrade !pip install scikit-image --upgrade !pip install imageio --upgrade

Load raw images

Load segmentation masks

segm_img = tifffile.imread(f'{masks_path}{slide_id}.ome_mask_agt_closed_2.tif') colored_segm_img = color_tiff(segm_img)

plt.imshow(colored_segm_img)

plt.show()

Full brain maps with background

Full brain maps WITHOUT background